2022
Opar, E., G. Alpakut, U. Parlatan, S. Yavas, B. Yuksel, M.B. Unlu, H.F. Buyru, E. Bastu, and O. Ferhanoglu, Challenges in Developing a Bessel-Beam Based Ultrafast Ablation Probe. Instruments and Experimental Techniques, 2022. 65(3): p. 444.
Loc, I., I. Kecoglu, M.B. Unlu, and U. Parlatan, Denoising Raman spectra using fully convolutional encoder-decoder network. Journal of Raman Spectroscopy, 2022. 53(8): p. 1445.
Kecoglu, I., M. Sirkeci, M.B. Unlu, A. Sen, U. Parlatan, and F. Guzelcimen, Quantification of salt stress in wheat leaves by Raman spectroscopy and machine learning. Scientific Reports, 2022. 12(1).
Parlatan, U., S. Parlatan, K. Sen, I. Kecoglu, M.O. Ulukan, A. Karakaya, K. Erkanli, H. Turkoglu, M. Ugurlucan, M.B. Unlu, and B. Tanoren, Atrial fibrillation designation with micro-Raman spectroscopy and scanning acoustic microscope. Scientific Reports, 2022. 12(1).
Koyuncu, B., A. Melek, D. Yilmaz, M. Tuzer, and M.B. Unlu, Chemotherapy response prediction with diffuser elapser network. Scientific Reports, 2022. 12(1).
Yilmaz, D., M. Tuzer, and M.B. Unlu, Assessing the therapeutic response of tumors to hypoxia-targeted prodrugs with an in silico approach. Mathematical Biosciences and Engineering, 2022. 19(11): p. 10941.
2021
Debir, B., C. Meaney, M. Kohandel, and M.B. Unlu, The role of calcium oscillations in the phenotype selection in endothelial cells. Scientific Reports, 2021. 11(1).
Tanoren, B., U. Parlatan, M. Parlak, I. Kecoglu, M.B. Unlu, D.M. Oztas, M.O. Ulukan, K. Erkanli, and M. Ugurlucan, Aortic aneurysm evaluation by scanning acoustic microscopy and Raman spectroscopy. Analytical Methods, 2021. 13(39): p. 4683.
Soysal, K.B., S. Parlatan, M. Mastanzade, M. Ozbalak, M.N. Yenerel, M.B. Unlu, G. Basar, and U. Parlatan, Raman tweezers as an alternative diagnostic tool for paroxysmal nocturnal hemoglobinuria.Analytical Methods, 2021. 13(35): p. 3963.
Oztas, D.M., B.T. Bilen, L.T. Sener, M.O. Beyaz, M.O. Ulukan, O. Unal, M.B. Unlu, P.E.O. Reis, and M. Ugurlucan, Carotid artery plaque structure in the context of symptomatic/asymptomatic nature of carotid artery stenosis. Cor Et Vasa, 2021. 63(4): p. 459.
Nakamura, Y., T. Takayanagi, T. Uesaka, M.B. Unlu, Y. Kuriyama, Y. Ishi, T. Uesugi, M. Kobayashi, N. Kudo, S. Tanaka, K. Umegaki, S. Tomioka, and T. Matsuura, Technical Note: Range verification of pulsed proton beams from fixed-field alternating gradient accelerator by means of time-of-flight measurement of ionoacoustic waves. Medical Physics, 2021. 48(9): p. 5490.
Tanoren, B., U. Parlatan, M. Parlak, B. Selcuk, F.A. Alkan, N.P. Ozsobaci, G. Albeniz, L.T. Sener, I. Albeniz, and M.B. Unlu, Determination of modifications in rat liver due to phthalate uptake by SAM, RS, and ICP-OES.Analytical Methods, 2021. 13(26): p. 2926.
Inanc, M.T., I. Demirkan, C. Ceylan, A. Ozkan, O. Gundogdu, U. Goreke, U.A. Gurkan, and M.B. Unlu, Quantifying the influences of radiation therapy on deformability of human red blood cells by dual-beam optical tweezers. Rsc Advances, 2021. 11(26): p. 15519.
Altun, B., I. Demirkan, E.O. Isik, O. Kocaturk, M.B. Unlu, and B. Garipcan, Acoustic impedance measurement of tissue mimicking materials by using scanning acoustic microscopy. Ultrasonics, 2021. 110.
Alpakut, G., M.B. Unlu, and S. Yavas, Femtosecond fiber oscillator with adjustable central wavelength and bandwidth optimized for high power amplification. Fiber Lasers Xviii: Technology and Systems, 2021. 11665.
Alpakut, G., M.B. Unlu, and S. Yavas, Femtosecond-pulsed glass welding of chemically tempered aluminosilicate glasses. Laser-Based Micro- and Nanoprocessing Xv, 2021. 11674.
Alpakut, G., I. Atespare, M.B. Unlu, and S. Yavas, High throughput fs-pulsed-glass welding via spiral scanning system. Laser-Based Micro- and Nanoprocessing Xv, 2021. 11674.
2020
Guzelcimen, F., B. Tanoren, C. Cetinkaya, M.D. Kaya, H.I. Efkere, Y. Ozen, D. Bingol, M. Sirkeci, B. Kinaci, M.B. Unlu, and S. Ozcelik, The effect of thickness on surface structure of rf sputtered TiO2 thin films by XPS, SEM/EDS, AFM and SAM. Vacuum, 2020. 182.
Takayanagi, T., T. Uesaka, Y. Nakamura, M.B. Unlu, Y. Kuriyama, T. Uesugi, Y. Ishi, N. Kudo, M. Kobayashi, K. Umegaki, S. Tomioka, and T. Matsuura, On-line range verification for proton beam therapy using spherical ionoacoustic waves with resonant frequency. Scientific Reports, 2020. 10(1).
Algarawi, M., H. Erkol, A. Luk, S. Ha, M.B. Unlu, G. Gulsen, and F. Nouizi, Multi-Wavelength Photo-Magnetic Imaging System for Photothermal Therapy Guidance. Lasers in Surgery and Medicine, 2021. 53(5): p. 713.
Algarawi, M., H. Erkol, A. Luk, S. Ha, M.B. Unlu, G. Gulsen, and F. Nouizi, Resolving tissue chromophore concentration at MRI resolution using multi-wavelength photo-magnetic imaging.Biomedical Optics Express, 2020. 11(8): p. 4244.
Takayanagi, T., T. Uesaka, Y. Nakamura, M. Unlu, Y. Kuriyama, Y. Ishi, T. Uesugi, N. Kudo, M. Kobayashi, K. Umegaki, and T. Matsuura, Resonant Ionoacoustic Measurement Under Clinical Dose: A Study Toward Online Range Verification. Medical Physics, 2020. 47(6): p. E475.
Demirkan, I., G. Yaprak, C. Ceylan, E. Algul, C.O. Tomruk, B. Bilen, and M.B. Unlu, Acoustic diagnosis of elastic properties of human tooth by 320 MHz scanning acoustic microscopy after radiotherapy treatment for head and neck cancer. Radiation Oncology, 2020. 15(1).
2019
Parlatan, U., M.T. Inanc, B.Y. Ozgor, E. Oral, E. Bastu, M.B. Unlu, and G. Basar, Raman spectroscopy as a non-invasive diagnostic technique for endometriosis. Scientific Reports, 2019. 9.
Bilen, B.T., M. Parlak, and M.B. Unlu, Scanning acoustic microscopy of quantum dot aggregates.Biomedical Physics & Engineering Express, 2019. 5(6).
Tanoren Bilen, Bukem, "Designating Vulnerability of Atherosclerotic Plaques", Lipid Peroxidation Research, 2019. doi: 10.5772/intechopen.90664.
Irem Demirkan, Mehmet Burcin Unlu, Bukem Bilen, "Determining sodium diffusion through acoustic impedance measurements using 80 MHz Scanning Acoustic Microscopy: Agarose phantom verification", Ultrasonics, Volume 94, 2019, Pages 10-19.
Gokhan Guney, Nasire Uluc, Aytac Demirkiran, Esra Aytac-Kipergil, Mehmet Burcin Unlu, Ozlem Birgul, "Comparison of noise reduction methods in photoacoustic microscopy", Computers in Biology and Medicine, Volume 109, 2019, Pages 333-341.
Bilen B, Turker Sener L, Albeniz I, Sezen M, Unlu MB, Ugurlucan M. "Determination of Ultrastructural Properties of Human Carotid Atherosclerotic Plaques by Scanning Acoustic Microscopy, Micro-Computer Tomography, Scanning Electron Microscopy and Energy Dispersive X-Ray Spectroscopy" Scientific Reports 2019;9(1):679.
Bilen B, Parlak M, Unlu MB. "Scanning acoustic microscopy of quantum dot aggregates" Biomedical Physics & Engineering Express, 2019;5:065025.
2018
Takayanagi T, et. al. "A novel range-verification method using ionoacoustic wave generated from spherical gold markers for particle-beam therapy: a simulation study, submitted to Scientific Reports, (2018).
Lin, Hongxiang, Takashi Azuma, Mehmet Burcin Unlu, and Shu Takagi. "Evaluation of Adjoint Methods in Photoacoustic Tomography with Under-Sampled Sensors." arXiv preprint arXiv:1806.08558 (2018).
Sanli, Canberk, Esra Aytac Kipergil, and Mehmet Burcin Unlu. "Simple analytic model for radiotherapeutic X-ray induced acoustic signal as a function of absorption parameters." arXiv preprint arXiv:1801.05956 (2018).
Bilen, Bukem, et. al. "Scanning Acoustic Microscopy and Time-Resolved Fluorescence Spectroscopy for Characterization of Atherosclerotic Plaques" Scientific Reports 2018;8(1):14378.
Uluc N., et al., “An extended photoacoustic transport model for characterization of red blood cell morphology in microchannel flow”, Biomedical Optics Express, 9, 6, 2785-2809, (2018).
Demirkıran A., et al. “Analysis of micro cantilevers excited by pulsed-laser-induced photo acoustic waves”, Optics Express, 26, 4, 4906, (2018).
2017
Yonucu S, et al. “Quantifying the effects of antiangiogenic and chemotherapy drug combinations on drug delivery and treatment efficacy”, PLoS Comput Biol 13(9): e1005724, (2017).
Alex Luk, Farouk Nouzi, Hakan Erkol, Mehmet Burcin Unlu, Gultekin Gulsen, Ex vivo validation of Photo-Magnetic Imaging, Opt. Lett. 42(20), 4171-4174,(2017).
Esra Aytac Kipergil, Hakan Erkol, Serhat Kaya, Gultekin Gulsen and Mehmet Burcin Unlu, "An Analysis of Proton-Acoustic Waves through an Analytical Approach" Physics in Medicine and Biology, Volume 62, Number 12, (2017).
2016
Esra Aytac Kipergil, Aytac Demirkiran, Nasire Uluc, Seydi Yavas, Tunc Kayıkcıoglu, Sarper Salman, Fatih Ilday, Mehmet Unlu, “Development of a Fiber Laser with Independently Adjustable Properties for Optical Resolution Photoacoustic Microscopy”, 6-38674, Scientific Reports, (2016).
Nouizi, F., Erkol, H., Luk, A., Marks, M., Unlu, M. B., & Gulsen, G. (2016). An accelerated photo-magnetic imaging reconstruction algorithm based on an analytical forward solution and a fast Jacobian assembly method. Physics in Medicine and Biology, 61(20), 7448.
Nouizi, F., Erkol, H., Luk, A., Unlu, M.B. and Gulsen, G., 2016. Real-time photo magnetic imaging. Biomedical Optics Express, 7(10), pp.3899-3904.
Kwong, Tiffany C., et al. "Differentiation of tumor vasculature heterogeneity levels in small animals based on total hemoglobin concentration using magnetic resonance-guided diffuse optical tomography in vivo." Applied Optics 55.21 (2016): 5479-5487.
updated at Dec 2, 2022
